Co-expression analysis

Gene ID PtpAffx.211622.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g35580: CINV1 (cytosolic invertase 1) (HF=9e-6)
Module size 6 genes
NF 0.26
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.80PtpAffx.211622.1.S1_atpmrna22777--9e-6At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4673.70.80PtpAffx.119247.1.A1_atDN486218--4e+0At5g50665unknown proteinO.I.H.G.S.X.
0.3153.70.81PtpAffx.218251.1.S1_atpmrna33803hypothetical protein-2e+1At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.3153.70.81PtpAffx.217704.1.S1_atpmrna33068hypothetical protein-3e-86Atcg01280-O.I.H.G.S.X.
0.1729.10.81PtpAffx.208921.1.S1_atpmrna17689hypothetical protein-7e-2At3g06390integral membrane family proteinO.I.H.G.S.X.
0.0914.60.80PtpAffx.219999.1.S1_atpmrna36231hypothetical protein-9e-6At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os11g0175400, orthologous to the query gene, PtpAffx.211622.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4355.4Os11g0175400At1g35580-Plant neutral invertase family protein2e-11At1g72000beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeO.I.H.G.S.X.
0.3338.8Os02g0118200At1g35580-Protein kinase8e-4At4g35600CONNEXIN 32O.I.H.G.S.X.
0.2219.4Os03g0778000At1g35580-Conserved hypothetical protein1e+1At5g17210unknown proteinO.I.H.G.S.X.
0.1510.3Os01g0165000At1g35580-DRE binding protein 28e-12At5g18450AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1510.3Os08g0107400At1g35580-GDP-mannose transporter3e-13At2g13650GONST1 (Golgi Nucleotide Sugar Transporter 1)O.I.H.G.S.X.
0.1510.3Os02g0827900At1g35580-Signal peptidase 18 subunit (Fragment)5e-8At1g52600signal peptidase, putativeO.I.H.G.S.X.
0.073.7Os03g0264400At1g35580-Anthranilate synthase alpha 2 subunit4e-16At2g29690ASA2 (ANTHRANILATE SYNTHASE 2)O.I.H.G.S.X.
0.042.0Os02g0819700At1g35580-DNL zinc finger domain containing protein8e-3At3g54826-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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