Co-expression analysis

Gene ID	PtpAffx.211622.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g35580: CINV1 (cytosolic invertase 1) (HF=9e-6)
Module size	6 genes
NF	0.26
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.80	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.80	PtpAffx.119247.1.A1_at	DN486218	-	-	4e+0	At5g50665	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.81	PtpAffx.218251.1.S1_at	pmrna33803	hypothetical protein	-	2e+1	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.81	PtpAffx.217704.1.S1_at	pmrna33068	hypothetical protein	-	3e-86	Atcg01280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.81	PtpAffx.208921.1.S1_at	pmrna17689	hypothetical protein	-	7e-2	At3g06390	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.80	PtpAffx.219999.1.S1_at	pmrna36231	hypothetical protein	-	9e-6	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig11836_at, orthologous to the query gene, PtpAffx.211622.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig11836_at	At1g35580	-	-	6e-10	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig20846_at	At1g35580	-	-	3e-6	At4g36860	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig6633_at	At1g35580	-	-	4e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig6634_at	At1g35580	-	-	9e-4	At3g09470	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig18444_at	At1g35580	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig18440_at	At1g35580	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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