Co-expression analysis

Gene ID	PtpAffx.211570.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g46130: WRKY43 (HF=3e-12)
Module size	6 genes
NF	0.60
%ile	90.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.92	PtpAffx.211570.1.S1_x_at	pmrna22678	hypothetical protein	-	3e-12	At2g46130	WRKY43	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.92	PtpAffx.211570.1.S1_at	pmrna22678	hypothetical protein	-	3e-12	At2g46130	WRKY43	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.93	PtpAffx.201979.1.S1_at	pmrna3951	hypothetical protein	-	3e-26	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.202077.1.S1_at	pmrna4143	cytochrome P450 ent-kaurene oxidase	-	2e-13	At5g25900	GA3 (GA REQUIRING 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.93	PtpAffx.18783.1.A1_at	CV233908	amino acid permease	-	1e-19	At1g77380	AAP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.57293.1.A1_s_at	CV231893	hypothetical protein	-	5e+0	At4g34600	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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