Co-expression analysis

Gene ID	PtpAffx.211490.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g03710: SEP4 (SEPALLATA 4) (HF=3e-32)
Module size	6 genes
NF	0.42
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	PtpAffx.211490.1.S1_at	pmrna22518	hypothetical protein	-	3e-32	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	PtpAffx.208357.1.S1_at	pmrna16615	hypothetical protein	-	1e-19	At3g06210	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	PtpAffx.217356.1.S1_at	pmrna32578	hypothetical protein	-	8e-1	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.98	PtpAffx.215800.1.S1_at	pmrna30196	hypothetical protein	-	2e-12	At3g19090	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.99	PtpAffx.204758.1.S1_s_at	pmrna9361	hypothetical protein	-	2e-2	At1g23710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.98	PtpAffx.213550.1.S1_at	pmrna26481	amino acid transporter	-	6e-14	At5g02180	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.8	98.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.5	98.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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