Co-expression analysis

Gene ID	PtpAffx.21139.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g07400: 17.8 kDa class I heat shock protein (HSP17.8-CI) (HF=2e-15)
Module size	6 genes
NF	0.29
%ile	51.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.91	PtpAffx.21139.1.S1_at	BU889382	hypothetical protein	-	2e-15	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.57928.2.S1_at	BI120751	hypothetical protein	-	1e+0	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.111871.2.S1_at	CX170955	hypothetical protein	-	5e+0	Atmg01250	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.82253.1.A1_at	CV232973	hypothetical protein	-	2e-20	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	Ptp.1501.1.A1_s_at	CK093594	hypothetical protein	-	4e-23	At2g18190	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.114748.1.A1_at	CV245313	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the barley gene, HY03K23u_at, orthologous to the query gene, PtpAffx.21139.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	HY03K23u_at	At1g07400	-	-	1e-12	At3g46230	ATHSP17.4	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig25420_at	At1g07400	-	-	1e+0	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.84	94.3	HVSMEl0002I06r2_at	At1g07400	-	-	1e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select
0.80	92.5	HY10H17u_at	At1g07400	-	-	7e-1	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	O.I.	H.G.	S.X.	Please select
0.80	92.5	HT07E09u_at	At1g07400	-	-	1e+0	At1g49120	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig12879_at	At1g07400	-	-	1e-5	At4g20760	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	HS06J15u_x_at	At1g07400	-	-	1e+1	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.70	86.0	EBem05_SQ003_L06_at	At1g07400	-	-	3e+0	At3g21371	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	79.1	HVSMEa0011L19r2_at	At1g07400	-	-	5e-2	At3g50210	2-oxoacid-dependent oxidase, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	Contig328_at	At1g07400	-	-	2e+0	At3g49300	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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