CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.21139.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g07400: 17.8 kDa class I heat shock protein (HSP17.8-CI) (HF=2e-15)

Module size 6 genes

NF 0.29

%ile 51.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.91 PtpAffx.21139.1.S1_at BU889382 hypothetical protein - 2e-15 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.57928.2.S1_at BI120751 hypothetical protein - 1e+0 At3g52990 pyruvate kinase, putative O.I. H.G. S.X.
0.40 67.0 0.94 PtpAffx.111871.2.S1_at CX170955 hypothetical protein - 5e+0 Atmg01250 - O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.82253.1.A1_at CV232973 hypothetical protein - 2e-20 At3g52990 pyruvate kinase, putative O.I. H.G. S.X.
0.23 40.5 0.91 Ptp.1501.1.A1_s_at CK093594 hypothetical protein - 4e-23 At2g18190 AAA-type ATPase family protein O.I. H.G. S.X.
0.14 23.5 0.91 PtpAffx.114748.1.A1_at CV245313 hypothetical protein - 3e-14 At5g42720 glycosyl hydrolase family 17 protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.5 98.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.90913.1.S1_s_at, orthologous to the query gene, PtpAffx.21139.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 GmaAffx.90913.1.S1_s_at At1g07400 - - 1e-9 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.91 98.6 GmaAffx.72322.1.S1_at At1g07400 - - 2e-12 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative O.I. H.G. S.X.
0.91 98.6 Gma.7766.1.S1_at At1g07400 - - 6e-3 At5g12020 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) O.I. H.G. S.X.
0.80 91.5 Gma.2185.3.S1_at At1g07400 - - 5e-6 At3g25230 ROF1 (ROTAMASE FKBP 1) O.I. H.G. S.X.
0.77 90.3 Gma.2185.2.S1_a_at At1g07400 - - 3e-1 At3g25230 ROF1 (ROTAMASE FKBP 1) O.I. H.G. S.X.
0.60 80.7 GmaAffx.49167.1.S1_at At1g07400 - - 2e-1 At5g59530 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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