Co-expression analysis

Gene ID	PtpAffx.211375.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g42520: DEAD box RNA helicase, putative (HF=4e-9)
Module size	10 genes
NF	0.43
%ile	72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.96	PtpAffx.211375.1.S1_s_at	pmrna22296	hypothetical protein	-	4e-9	At2g42520	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.97	PtpAffx.209161.1.S1_x_at	pmrna18133	hypothetical protein	-	1e-8	At1g14170	KH domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.97	Ptp.5762.1.S1_at	AJ777748	ebs-bah-phd domain-containing protein	-	2e-46	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.97	PtpAffx.10545.2.S1_a_at	BU875296	hypothetical protein	-	2e-10	At5g38630	ACYB-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.3203.6.S1_a_at	CV131510	hypothetical protein	-	3e-11	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.97	PtpAffx.39134.2.S1_s_at	BU818720	hypothetical protein	-	8e-23	At5g10270	CDKC	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.124592.1.S1_s_at	DN496233	hypothetical protein	-	2e+0	At5g40500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.53600.1.S1_at	DN499448	-	-	4e-32	At3g05010	transmembrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.97	Ptp.5187.1.S1_s_at	AJ768823	hypothetical protein	-	4e-39	At2g24360	serine/threonine/tyrosine kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	Ptp.5617.2.S1_a_at	CV281313	-	-	3e-19	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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