Co-expression analysis

Gene ID	PtpAffx.211268.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g54190: - (HF=5e-66)
Module size	10 genes
NF	0.56
%ile	86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.96	PtpAffx.211268.1.S1_s_at	pmrna22106	hypothetical protein	-	5e-66	At3g54190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.97	PtpAffx.221950.1.S1_at	pmrna39078	hypothetical protein	-	2e-17	At4g35870	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	Ptp.4943.1.S1_at	CV249629	hypothetical protein	-	2e-99	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	PtpAffx.132345.1.A1_s_at	CV253345	hypothetical protein	-	2e-30	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.60823.1.S1_at	CV261988	hypothetical protein	-	2e-34	At2g15240	UNC-50 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	PtpAffx.48314.1.S1_at	CV270190	-	-	3e+0	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.50041.2.A1_a_at	CK095371	hypothetical protein	-	1e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.98	PtpAffx.4784.1.A1_s_at	CV268464	hypothetical protein	-	8e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.97	Ptp.407.1.A1_at	CK088895	hypothetical protein	-	2e+0	At3g16040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.98	PtpAffx.6505.1.A1_s_at	CV238517	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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