Co-expression analysis

Gene ID	PtpAffx.211210.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g55820: - (HF=3e+0)
Module size	9 genes
NF	0.14
%ile	26.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.77	PtpAffx.211210.1.S1_at	pmrna22025	hypothetical protein	-	3e+0	At3g55820	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.82	PtpAffx.67699.1.A1_at	DN487557	-	-	7e+0	At4g31330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.81	PtpAffx.215214.1.S1_at	pmrna29271	-	-	3e-2	At4g31080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.79	PtpAffx.216810.1.S1_at	pmrna31842	hypothetical protein	-	2e-15	At2g35720	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.81	PtpAffx.209085.1.S1_at	pmrna17973	-	-	1e-1	At1g47980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.78	PtpAffx.221842.1.S1_at	pmrna38925	hypothetical protein	-	1e+0	At1g71310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.80	Ptp.3007.2.S1_at	DN500603	hypothetical protein	-	7e-36	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.81	PtpAffx.201468.1.S1_at	pmrna2885	histidine phosphotransfer protein	-	8e-1	At5g20810	auxin-responsive protein, putative / small auxin up RNA (SAUR_B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.80	PtpAffx.209395.1.S1_at	pmrna18610	hypothetical protein	-	2e+0	At2g28900	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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