Co-expression analysis

Gene ID	PtpAffx.211017.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g23340: ckl10 (Casein Kinase I-like 10) (HF=1e-76)
Module size	6 genes
NF	0.35
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.98	PtpAffx.211017.1.S1_at	pmrna21650	hypothetical protein	-	1e-76	At3g23340	ckl10 (Casein Kinase I-like 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	PtpAffx.221712.1.S1_at	pmrna38738	-	-	2e-7	At2g33630	3-beta hydroxysteroid dehydrogenase/isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.31289.1.A1_at	CV241122	hypothetical protein	-	6e-1	At3g47940	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.98	PtpAffx.207751.1.S1_at	pmrna15424	hypothetical protein	-	6e-60	At2g40090	ATATH9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.98	PtpAffx.5859.1.S1_at	BU837715	hypothetical protein	-	4e+0	At5g43850	ARD4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.98	PtpAffx.18829.1.A1_at	CV232024	hypothetical protein	-	2e+0	At4g16520	ATG8F (autophagy 8f)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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