Co-expression analysis

Gene ID PtpAffx.211016.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g10095: protein prenyltransferase (HF=5e-29)
Module size 10 genes
NF 0.50
%ile 80.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8497.10.95PtpAffx.211016.1.S1_atpmrna21649hypothetical protein-5e-29At1g10095protein prenyltransferaseO.I.H.G.S.X.
0.7192.60.95PtpAffx.216802.1.S1_atpmrna31828hypothetical protein-5e-6At5g20300chloroplast outer membrane protein, putativeO.I.H.G.S.X.
0.6388.10.96PtpAffx.208794.1.S1_atpmrna17436chromatin remodeling complex subunit-2e-93At3g06010ATCHR12O.I.H.G.S.X.
0.5984.90.96PtpAffx.126848.1.A1_s_atCV283487hypothetical protein-9e-24At5g67530peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.4369.70.97PtpAffx.204435.1.S1_s_atpmrna8712condensin complex components subunit-6e-65At2g27170TTN7 (TITAN7)O.I.H.G.S.X.
0.4167.70.96PtpAffx.125801.1.A1_s_atBP930539hypothetical protein-6e-6At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.4067.00.97PtpAffx.11559.3.A1_s_atCK104845hypothetical protein-3e-76At1g50030TOR (TARGET OF RAPAMYCIN)O.I.H.G.S.X.
0.4067.00.97PtpAffx.119547.1.S1_s_atBP928546hypothetical protein-1e-89At2g42500PP2A-4O.I.H.G.S.X.
0.3357.50.96PtpAffx.36162.1.S1_atBP936907--2e-6At5g53330-O.I.H.G.S.X.
0.1932.70.96PtpAffx.8850.1.A1_atCV238560hypothetical protein-4e-16At1g13580LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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