Co-expression analysis

Gene ID PtpAffx.210978.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g36930: disease resistance protein (TIR-NBS-LRR class), putative (HF=6e-2)
Module size 6 genes
NF 0.03
%ile 7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.85PtpAffx.210978.1.S1_atpmrna21564--6e-2At5g36930disease resistance protein (TIR-NBS-LRR class), putativeO.I.H.G.S.X.
0.3153.70.88PtpAffx.201885.1.S1_atpmrna3757hypothetical protein-3e+0At4g39860unknown proteinO.I.H.G.S.X.
0.0914.60.87PtpAffx.221877.1.S1_atpmrna38978hypothetical protein-2e+0At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.058.30.85PtpAffx.217260.1.S1_atpmrna32449hypothetical protein-2e-97At2g07360SH3 domain-containing proteinO.I.H.G.S.X.
0.023.60.85PtpAffx.202778.1.S1_atpmrna5526hypothetical protein-1e+0At4g36660unknown proteinO.I.H.G.S.X.
0.012.20.85PtpAffx.41908.1.S1_atDN493129hypothetical protein-4e-1At3g52550-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.998.0GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.594.3GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.293.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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