Co-expression analysis

Gene ID	PtpAffx.210962.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g56600: PRF3 (PROFILIN 3) (HF=3e-2)
Module size	6 genes
NF	0.10
%ile	20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.83	PtpAffx.210962.1.S1_s_at	pmrna21538	hypothetical protein	-	3e-2	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.216299.1.S1_at	pmrna30984	amino acid permease	-	9e-1	At5g23810	AAP7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.94	Ptp.4672.1.S1_at	BI129888	hypothetical protein	-	3e-26	At4g24530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.92	PtpAffx.207662.1.S1_at	pmrna15207	hypothetical protein	-	6e-4	At3g45740	hydrolase family protein / HAD-superfamily protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.95	Ptp.5082.1.S1_s_at	CX654214	hypothetical protein	-	8e-41	At3g52880	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.91	PtpAffx.151332.1.S1_at	DN500752	-	-	4e+0	At2g16070	PDV2 (PLASTID DIVISION2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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