Co-expression analysis

Gene ID PtpAffx.210934.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g54730: sugar transporter, putative (HF=1e-11)
Module size 7 genes
NF 0.66
%ile 94.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4268.60.94PtpAffx.210934.1.S1_atpmrna21486hypothetical protein-1e-11At1g54730sugar transporter, putativeO.I.H.G.S.X.
0.9299.30.96Ptp.5851.1.S1_s_atBU866697hypothetical protein-3e-30At3g10850GLY2O.I.H.G.S.X.
0.7393.60.96PtpAffx.212420.1.S1_s_atpmrna24328hypothetical protein-1e-3At2g42370unknown proteinO.I.H.G.S.X.
0.6187.00.95PtpAffx.106976.1.S1_s_atCX185454hypothetical protein-3e-8At2g25070protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.6187.00.97PtpAffx.200170.1.S1_atpmrna315ZIP transporter-3e-64At3g20870metal transporter family proteinO.I.H.G.S.X.
0.6086.00.96PtpAffx.9226.1.S1_atCV244391hypothetical protein-3e-12At5g58220TTL (Transthyretin-Like protein)O.I.H.G.S.X.
0.5784.20.97PtpAffx.200170.1.S1_x_atpmrna315ZIP transporter-3e-64At3g20870metal transporter family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.098.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.393.7GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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