Co-expression analysis

Gene ID	PtpAffx.210857.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g56350: peptide chain release factor, putative (HF=1e-38)
Module size	9 genes
NF	0.18
%ile	34.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.93	PtpAffx.210857.1.S1_at	pmrna21321	hypothetical protein	-	1e-38	At1g56350	peptide chain release factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.207776.1.S1_s_at	pmrna15461	hypothetical protein	-	1e-5	At5g05520	outer membrane OMP85 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.151883.1.A1_s_at	CK089317	-	-	4e-4	At4g35785	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.215955.1.S1_at	pmrna30438	hypothetical protein	-	3e-15	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.211469.1.S1_at	pmrna22477	hypothetical protein	-	3e-1	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.213050.1.S1_at	pmrna25538	hypothetical protein	-	7e-22	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.157613.1.S1_at	CX656242	hypothetical protein	-	2e-8	At4g31010	RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.93	Ptp.880.2.A1_a_at	CV253146	hypothetical protein	-	1e-21	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.93	PtpAffx.1577.1.S1_at	BU824466	-	-	2e-4	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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