Co-expression analysis

Gene ID PtpAffx.210842.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g56590: clathrin adaptor complexes medium subunit family protein (HF=2e-59)
Module size 7 genes
NF 0.31
%ile 54.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.96PtpAffx.210842.1.S1_atpmrna21295hypothetical protein-2e-59At1g56590clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.6086.00.96Ptp.3112.1.S1_s_atBU898191hypothetical protein-5e-1At2g46090diacylglycerol kinase family proteinO.I.H.G.S.X.
0.4673.70.96PtpAffx.43571.1.S1_atBU812831hypothetical protein-2e-23At2g39630glycosyl transferase family 2 proteinO.I.H.G.S.X.
0.4067.00.97PtpAffx.14248.2.S1_atCV257447hypothetical protein-3e-19At4g36440unknown proteinO.I.H.G.S.X.
0.2950.50.96PtpAffx.60823.1.S1_atCV261988hypothetical protein-2e-34At2g15240UNC-50 family proteinO.I.H.G.S.X.
0.2034.60.96Ptp.8046.1.S1_s_atBU885382hypothetical protein-2e-8At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.1321.60.96PtpAffx.11716.2.S1_a_atCV245206--2e-18At1g30970SUF4 (suppressor of FRIGIDA4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.193.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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