Co-expression analysis

Gene ID	PtpAffx.210792.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g63740: zinc finger protein-related (HF=5e-2)
Module size	21 genes
NF	0.19
%ile	35.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	91.3	0.85	PtpAffx.210792.1.S1_at	pmrna21173	hypothetical protein	-	5e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.89	PtpAffx.10648.2.S1_a_at	BI126015	hypothetical protein	-	3e-90	At5g27840	TOPP8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.44.1.S1_a_at	CV244697	hypothetical protein	-	5e-1	At1g21810	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	Ptp.6693.1.S1_s_at	DN502598	copper transporter	-	9e-2	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	PtpAffx.218447.1.S1_at	pmrna34066	hypothetical protein	-	1e-11	At1g16670	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	Ptp.8026.1.A1_at	BU815525	hypothetical protein	-	4e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.92	PtpAffx.152326.1.S1_s_at	CK094925	hypothetical protein	-	5e-10	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	PtpAffx.131744.1.S1_at	CK087907	hypothetical protein	-	3e-55	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.221019.1.S1_at	pmrna37555	-	-	1e-13	At5g18070	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.93	PtpAffx.107907.1.A1_at	CV261600	hypothetical protein	-	9e-1	At3g54940	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.29180.1.S1_s_at	CX656046	hypothetical protein	-	6e-1	At4g20820	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	Ptp.5098.1.S1_s_at	CV241440	hypothetical protein	-	3e-14	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.125271.1.S1_s_at	AI162010	hypothetical protein	-	1e+0	At4g22620	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.13062.1.A1_s_at	CV245818	f-box family protein	-	5e-1	At2g27229	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	Ptp.782.1.S1_s_at	AY935510.1	hypothetical protein	-	7e-8	At4g27480	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	PtpAffx.207576.1.S1_s_at	pmrna15038	hypothetical protein	-	4e-45	At5g04560	DME (DEMETER)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.92	PtpAffx.152326.2.S1_s_at	BI125462	hypothetical protein	-	4e-16	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.32207.1.S1_at	CK106903	hypothetical protein	-	5e-10	At2g43780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.68656.1.S1_at	CV240354	hypothetical protein	-	1e+0	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.92	PtpAffx.224603.1.S1_at	pmrna43289	hypothetical protein	-	7e-34	At1g70740	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	Ptp.4301.1.S1_s_at	CV280558	-	-	6e-4	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.6	84.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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