Co-expression analysis

Gene ID	PtpAffx.210771.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g23030: MATE efflux protein-related (HF=5e-14)
Module size	16 genes
NF	0.31
%ile	54.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	0.84	PtpAffx.210771.1.S1_at	pmrna21133	hypothetical protein	-	5e-14	At4g23030	MATE efflux protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.90	PtpAffx.81522.1.S1_at	CX168774	hypothetical protein	-	1e-19	At5g54310	AGD5 (ARF-GAP domain 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.224636.1.S1_s_at	pmrna43370	hypothetical protein	-	2e-19	At1g70530	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.73050.1.S1_s_at	CK106394	hypothetical protein	-	3e-29	At4g38730	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.138640.1.A1_at	BP936559	hypothetical protein	-	1e-3	At1g07570	APK1A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.92	PtpAffx.100290.2.S1_at	CN520250	f-box family protein /// f-box family protein	-	6e+0	At5g09270	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.91	PtpAffx.210312.1.S1_at	pmrna20295	CPK related kinase 4	-	1e-18	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.88	PtpAffx.163561.1.S1_a_at	BU879414	hypothetical protein	-	3e-23	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.218266.1.S1_s_at	pmrna33818	hypothetical protein	-	4e-5	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.209201.1.S1_at	pmrna18195	hypothetical protein	-	7e-20	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.92	PtpAffx.71504.1.S1_at	CK091854	hypothetical protein	-	4e-1	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	PtpAffx.89229.1.S1_at	CV232583	hypothetical protein	-	1e+0	At1g17285	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.201101.1.S1_at	pmrna2173	hypothetical protein	-	1e+0	At1g67620	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.88	PtpAffx.33365.1.S1_at	DN491567	hypothetical protein	-	2e+0	At1g73780	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.90	PtpAffx.215070.1.S1_at	pmrna29031	hypothetical protein	-	3e-12	At1g34320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.91	PtpAffx.221157.1.S1_at	pmrna37802	hypothetical protein	-	8e-21	At5g66850	MAPKKK5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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