Co-expression analysis

Gene ID PtpAffx.210735.1.S1_at
Gene name cytochrome P450
Homology with ArabidopsisSimilar to At5g52400: CYP715A1 (HF=8e-4)
Module size 11 genes
NF 0.05
%ile 11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7292.70.84PtpAffx.210735.1.S1_atpmrna21061cytochrome P450-8e-4At5g52400CYP715A1O.I.H.G.S.X.
0.2950.50.86PtpAffx.210978.1.S1_atpmrna21564--6e-2At5g36930disease resistance protein (TIR-NBS-LRR class), putativeO.I.H.G.S.X.
0.2543.60.89PtpAffx.224262.1.S1_atpmrna42662hypothetical protein-3e-1At3g29575AFP3 (ABI FIVE BINDING PROTEIN 3)O.I.H.G.S.X.
0.0812.90.87PtpAffx.221052.1.S1_atpmrna37610hypothetical protein-3e-5At2g44990CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7)O.I.H.G.S.X.
0.0711.60.89PtpAffx.206781.1.S1_s_atpmrna13465hypothetical protein-3e-18At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.0711.60.86PtpAffx.200341.1.S1_atpmrna675hypothetical protein-3e-23At4g10750HpcH/HpaI aldolase family proteinO.I.H.G.S.X.
0.069.80.89PtpAffx.45426.1.S1_s_atCK113405--1e-42Atmg00030-O.I.H.G.S.X.
0.046.90.89Ptp.1426.1.S1_atCK109003--1e+1At5g07190ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)O.I.H.G.S.X.
0.046.90.89PtpAffx.17732.1.A1_atCV276389--1e+0At3g44450unknown proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.214435.1.S1_atpmrna28072hypothetical protein-2e-4At2g238905' nucleotidase family proteinO.I.H.G.S.X.
0.012.20.87PtpAffx.13676.1.A1_atCK096220hypothetical protein-3e-4At2g26260AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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