Co-expression analysis

Gene ID PtpAffx.210693.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=4e-125)
Module size 11 genes
NF 0.32
%ile 56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.89PtpAffx.210693.1.S1_atpmrna20965hypothetical protein-4e-125At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.4268.60.92PtpAffx.63510.1.A1_atCV239899hypothetical protein-1e-56At1g64230ubiquitin-conjugating enzyme, putativeO.I.H.G.S.X.
0.4268.60.92PtpAffx.3576.1.A1_atDN485110hypothetical protein-3e-9At4g38600KAK (KAKTUS)O.I.H.G.S.X.
0.3863.70.91PtpAffx.88853.1.A1_atCV249536--4e+0At2g03320unknown proteinO.I.H.G.S.X.
0.3661.60.92PtpAffx.221963.1.S1_atpmrna39099hypothetical protein-4e-15At2g17840ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)O.I.H.G.S.X.
0.3559.70.94PtpAffx.11514.1.A1_a_atCV256528hypothetical protein-4e-2At1g21380VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.3559.70.94PtpAffx.34866.2.A1_atCV274304hypothetical protein-4e-1At4g15790unknown proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.18719.4.A1_atCV243008hypothetical protein-6e-10At4g23570SGT1AO.I.H.G.S.X.
0.2136.50.92PtpAffx.6000.4.A1_a_atCX654821--4e-13At1g06515unknown proteinO.I.H.G.S.X.
0.2136.50.93PtpAffx.374.3.A1_a_atCV241040--4e-4At1g77840eukaryotic translation initiation factor 5, putative / eIF-5, putativeO.I.H.G.S.X.
0.1830.80.92PtpAffx.200515.1.S1_x_atpmrna1038hypothetical protein-7e-76At1g80350ERH3 (ECTOPIC ROOT HAIR 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.892.1GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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