Co-expression analysis

Gene ID	PtpAffx.210582.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g60480: unknown protein (HF=2e-1)
Module size	11 genes
NF	0.23
%ile	41.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	0.93	PtpAffx.210582.1.S1_at	pmrna20754	hypothetical protein	-	2e-1	At3g60480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	PtpAffx.114834.1.A1_at	CV242333	hypothetical protein	-	6e+0	At5g11740	AGP15 (ARABINOGALACTAN PROTEIN 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.30451.1.S1_a_at	CV245753	hypothetical protein	-	2e-47	At3g58600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.7326.1.S1_s_at	CK090735	hypothetical protein	-	2e-32	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.127497.1.A1_at	CV255731	nucleosome/chromatin assembly factor group	-	4e-7	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.96	PtpAffx.11559.1.A1_at	CV231183	hypothetical protein	-	2e+0	At1g36340	UBC31 (ubiquitin-conjugating enzyme 31)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.7433.2.A1_a_at	CV257766	hypothetical protein	-	1e-34	At3g04460	PEX12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.94	PtpAffx.157312.1.S1_at	CK091382	hypothetical protein	-	3e+0	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.9731.1.S1_at	CV255821	hypothetical protein	-	1e+1	At5g44582	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.93	PtpAffx.140962.1.A1_at	CV238123	-	-	1e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.94	PtpAffx.161774.1.S1_at	CV266043	hypothetical protein	-	2e+0	At3g19810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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