Co-expression analysis

Gene ID	PtpAffx.210579.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17990: TRP1 (tryptophan biosynthesis 1) (HF=3e-39)
Module size	10 genes
NF	0.73
%ile	97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.95	PtpAffx.210579.1.S1_at	pmrna20748	hypothetical protein	-	3e-39	At5g17990	TRP1 (tryptophan biosynthesis 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.89	97.8	0.97	PtpAffx.202423.1.S1_at	pmrna4863	hypothetical protein	-	8e-78	At4g01690	PPOX	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.96	PtpAffx.211801.1.S1_at	pmrna23142	hypothetical protein	-	3e-62	At4g02990	mitochondrial transcription termination factor family protein / mTERF family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.96	PtpAffx.129242.1.S1_a_at	BU878116	hypothetical protein	-	3e-10	At3g17800	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.74	93.8	0.96	PtpAffx.215360.1.S1_at	pmrna29502	hypothetical protein	-	5e+0	At5g38090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.96	PtpAffx.129242.1.S1_at	BU878116	hypothetical protein	-	3e-10	At3g17800	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.96	Ptp.2200.1.A1_s_at	CV260845	hypothetical protein	-	2e-34	At4g27990	YGGT family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.97	PtpAffx.202380.1.S1_s_at	pmrna4781	hypothetical protein	-	1e-159	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.214213.1.S1_at	pmrna27657	hypothetical protein	-	9e-50	At2g31170	SYCO ARATH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.98	PtpAffx.221485.1.S1_at	pmrna38388	hypothetical protein	-	4e-45	At1g15730	PRLI-interacting factor L, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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