Co-expression analysis

Gene ID PtpAffx.210568.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g47720: SRO4 (SIMILAR TO RCD ONE 4) (HF=3e-17)
Module size 6 genes
NF 0.72
%ile 96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.97PtpAffx.210568.1.S1_atpmrna20731hypothetical protein-3e-17At3g47720SRO4 (SIMILAR TO RCD ONE 4)O.I.H.G.S.X.
0.9199.20.98PtpAffx.212776.1.S1_atpmrna25004hypothetical protein-2e-3At3g47720SRO4 (SIMILAR TO RCD ONE 4)O.I.H.G.S.X.
0.8397.00.98PtpAffx.46129.1.S1_atCV230659hypothetical protein-4e+0At2g38646unknown proteinO.I.H.G.S.X.
0.7393.60.97PtpAffx.31276.1.A1_atCV241320hypothetical protein-1e+0At4g03510RMA1O.I.H.G.S.X.
0.5078.60.97PtpAffx.13691.1.A1_atCK095870--1e-1At5g49630AAP6 (AMINO ACID PERMEASE 6)O.I.H.G.S.X.
0.5078.60.97PtpAffx.222664.1.S1_atpmrna40216hypothetical protein-7e-1At4g19840ATPP2-A1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.395.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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