Co-expression analysis

Gene ID PtpAffx.210531.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g18950: aminoacyl-tRNA synthetase family (HF=3e-4)
Module size 25 genes
NF 0.41
%ile 69.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.95PtpAffx.210531.1.S1_atpmrna20646hypothetical protein-3e-4At1g18950aminoacyl-tRNA synthetase familyO.I.H.G.S.X.
0.5784.20.96PtpAffx.100628.1.S1_s_atCF232037hypothetical protein-2e+0At2g38350unknown proteinO.I.H.G.S.X.
0.5582.20.96PtpAffx.212736.1.S1_s_atpmrna24914hypothetical protein-3e-18At1g18950aminoacyl-tRNA synthetase familyO.I.H.G.S.X.
0.5279.40.96PtpAffx.202859.1.S1_atpmrna5655hypothetical protein-3e-2At1g72770HAB1 (HOMOLOGY TO ABI1)O.I.H.G.S.X.
0.5178.90.96PtpAffx.150427.1.S1_atBU832236hypothetical protein-4e-37At1g43190polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeO.I.H.G.S.X.
0.5178.90.97PtpAffx.61544.1.A1_atCA931045hypothetical protein-4e-19At3g59380FTA (FARNESYLTRANSFERASE A)O.I.H.G.S.X.
0.5078.60.97PtpAffx.149265.1.S1_s_atCV131132hypothetical protein-3e-54At2g14260PIPO.I.H.G.S.X.
0.4875.40.97PtpAffx.156707.1.S1_s_atBU873655hypothetical protein-4e-4At2g03110RNA binding / nucleic acid bindingO.I.H.G.S.X.
0.4673.70.97PtpAffx.496.3.S1_atAJ775413hypothetical protein-3e-4At5g56680SYNC1O.I.H.G.S.X.
0.4572.30.96PtpAffx.59404.1.S1_atBI138852hypothetical protein-2e-40At3g23300dehydration-responsive protein-relatedO.I.H.G.S.X.
0.4369.70.96PtpAffx.134857.1.S1_atCX185540hypothetical protein-2e-43At2g32080PUR ALPHA-1O.I.H.G.S.X.
0.4369.70.97PtpAffx.26440.3.S1_a_atCV237961hypothetical protein-1e-24At3g53500zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3964.60.96PtpAffx.144041.1.S1_s_atCX175818hypothetical protein-9e-14At3g26370unknown proteinO.I.H.G.S.X.
0.3964.60.97Ptp.5539.3.S1_a_atCV273441hypothetical protein-9e-17At4g26430CSN6BO.I.H.G.S.X.
0.3964.60.96PtpAffx.120301.1.S1_s_atCF235521hypothetical protein-9e-2At1g54360TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)O.I.H.G.S.X.
0.3863.70.97PtpAffx.85760.1.S1_s_atCX181147hypothetical protein-6e-6At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.3762.30.96PtpAffx.7567.1.S1_atCX174358hypothetical protein-1e-10At1g11910aspartyl protease family proteinO.I.H.G.S.X.
0.3559.70.97PtpAffx.132468.1.S1_s_atDN498520--4e-1At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.3559.70.97PtpAffx.17228.4.S1_a_atBU821659hypothetical protein-8e-7At1g57870ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)O.I.H.G.S.X.
0.3458.30.96PtpAffx.3203.6.S1_a_atCV131510hypothetical protein-3e-11At4g24940SAE1A (SUMO-ACTIVATING ENZYME 1A)O.I.H.G.S.X.
0.2950.50.96PtpAffx.123989.1.S1_atDN495946--8e-15At5g67630DNA helicase, putativeO.I.H.G.S.X.
0.2950.50.96PtpAffx.2294.1.S1_atCN524740hypothetical protein-4e-48At1g66530arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putativeO.I.H.G.S.X.
0.2950.50.97PtpAffx.218468.1.S1_atpmrna34094hypothetical protein-0At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.2850.50.96PtpAffx.63140.2.S1_s_atDN500684hypothetical protein-7e-11At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.2543.60.96Ptp.3857.1.S1_s_atBU884442hypothetical protein-6e-31At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
1.987.2GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.482.3GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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