CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.210312.1.S1_at

Gene name CPK related kinase 4
Homology with Arabidopsis Similar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18)

Module size 6 genes

NF 0.79

%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.94 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.83 97.0 0.92 Ptp.8056.1.S1_s_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH O.I. H.G. S.X.
0.80 96.0 0.95 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH O.I. H.G. S.X.
0.67 91.1 0.94 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.210312.1.S1_at	pmrna20295	CPK related kinase 4	-	1e-18	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.
0.83	97.0	0.92	Ptp.8056.1.S1_s_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.
0.80	96.0	0.95	Ptp.8056.1.S1_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.
0.73	93.6	0.94	PtpAffx.212573.1.S1_at	pmrna24632	hypothetical protein	-	2e-40	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.73	93.6	0.94	PtpAffx.149678.1.A1_at	AJ771832	hypothetical protein	-	3e-50	At5g64300	ATGCH	O.I.	H.G.	S.X.
0.67	91.1	0.94	PtpAffx.50176.2.S1_a_at	CV256175	hypothetical protein	-	1e-16	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	93.6	0.92	PtpAffx.152322.1.A1_at	DN487182	-	-	4e-35	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.
0.60	86.0	0.91	PtpAffx.65996.1.S1_at	CA926247	hypothetical protein	-	7e-6	At1g65840	ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4)	O.I.	H.G.	S.X.
0.60	86.0	0.91	PtpAffx.163561.1.S1_a_at	BU879414	hypothetical protein	-	3e-23	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	O.I.	H.G.	S.X.
0.59	84.9	0.87	PtpAffx.205738.1.S1_at	pmrna11323	hypothetical protein	-	2e-10	At2g30550	lipase class 3 family protein	O.I.	H.G.	S.X.
0.57	84.2	0.91	PtpAffx.205668.1.S1_at	pmrna11190	hypothetical protein	-	5e-8	At3g59080	aspartyl protease family protein	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.204865.1.S1_at	pmrna9614	hypothetical protein	-	2e-3	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	O.I.	H.G.	S.X.
0.50	78.6	0.92	PtpAffx.221134.1.S1_at	pmrna37763	hypothetical protein	-	7e-25	At4g36860	zinc ion binding	O.I.	H.G.	S.X.
0.43	69.7	0.89	PtpAffx.24491.2.S1_at	CV273830	hypothetical protein	-	5e-22	At4g14640	CAM8 (CALMODULIN 8)	O.I.	H.G.	S.X.
0.40	67.0	0.84	PtpAffx.225733.1.S1_s_at	pmrna45302	hypothetical protein	-	6e-1	At4g11900	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.207447.1.S1_s_at	pmrna14787	hypothetical protein	-	6e-23	At5g10530	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.59601.1.S1_a_at	CF232526	hypothetical protein	-	6e-3	At1g30620	MUR4 (MURUS 4)	O.I.	H.G.	S.X.
0.39	64.6	0.86	PtpAffx.208053.1.S1_at	pmrna15981	hypothetical protein	-	1e+0	At5g03190	CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)	O.I.	H.G.	S.X.
0.35	59.7	0.88	PtpAffx.210716.1.S1_s_at	pmrna21020	hypothetical protein	-	3e-17	At1g02170	AMC1 (METACASPASE 1)	O.I.	H.G.	S.X.
0.35	59.7	0.91	PtpAffx.140448.1.A1_at	CV254554	hypothetical protein	-	9e-18	At2g13650	GONST1 (Golgi Nucleotide Sugar Transporter 1)	O.I.	H.G.	S.X.
0.33	57.5	0.86	PtpAffx.153093.1.A1_at	CV270507	hypothetical protein	-	1e-1	At5g44410	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.224991.1.S1_at	pmrna43961	hypothetical protein	-	4e-15	At1g15530	receptor lectin kinase, putative	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.204308.1.S1_at	pmrna8483	hypothetical protein	-	4e-1	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.249.648.S1_at	DN491954	hypothetical protein	-	2e-23	At4g34640	SQS1 (SQUALENE SYNTHASE 1)	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.224787.1.S1_at	pmrna43636	hypothetical protein	-	2e-15	At1g16670	protein kinase family protein	O.I.	H.G.	S.X.
0.32	55.2	0.88	PtpAffx.154317.1.A1_s_at	CV240674	hypothetical protein	-	8e-24	At1g19270	DA1 (DA 1)	O.I.	H.G.	S.X.
0.31	53.7	0.89	PtpAffx.75600.1.A1_at	CV263767	hypothetical protein	-	1e-3	At2g26530	AR781	O.I.	H.G.	S.X.
0.31	53.7	0.90	PtpAffx.201812.1.S1_at	pmrna3609	hypothetical protein	-	4e-4	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.204286.1.S1_at	pmrna8431	hypothetical protein	-	2e-28	At2g21120	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.53248.1.S1_at	CF228233	hypothetical protein	-	3e-2	At1g60730	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.91	PtpAffx.204864.1.S1_at	pmrna9613	hypothetical protein	-	5e-7	At5g55380	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	O.I.	H.G.	S.X.
0.27	47.1	0.87	PtpAffx.221384.1.S1_s_at	pmrna38255	hypothetical protein	-	9e-1	At5g59110	subtilisin-like serine protease-related	O.I.	H.G.	S.X.
0.27	47.1	0.93	Ptp.2780.1.S1_s_at	CV262913	hypothetical protein	-	2e+0	At5g55856	-	O.I.	H.G.	S.X.
0.25	43.6	0.86	PtpAffx.208291.1.S1_at	pmrna16488	hypothetical protein	-	8e-32	At1g70630	-	O.I.	H.G.	S.X.
0.25	43.6	0.88	PtpAffx.217822.1.S1_at	pmrna33236	hypothetical protein	-	1e-3	At5g18890	inosine-uridine preferring nucleoside hydrolase family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7 96.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.7	97.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.210312.1.S1_at
Gene name	CPK related kinase 4
Homology with Arabidopsis	Similar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18)
Module size	6 genes
NF	0.79
%ile	98.8

Co-expression analysis

Gene ID PtpAffx.210312.1.S1_at Gene name CPK related kinase 4 Homology with ArabidopsisSimilar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18) Module size 6 genes NF 0.79 %ile 98.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.210312.1.S1_at

Gene name CPK related kinase 4
Homology with Arabidopsis Similar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18)

Module size 6 genes

NF 0.79

%ile 98.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays