Co-expression analysis

Gene ID	PtpAffx.210312.1.S1_at
Gene name	CPK related kinase 4
Homology with Arabidopsis	Similar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18)
Module size	6 genes
NF	0.79
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.94	PtpAffx.210312.1.S1_at	pmrna20295	CPK related kinase 4	-	1e-18	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.92	Ptp.8056.1.S1_s_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	Ptp.8056.1.S1_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.212573.1.S1_at	pmrna24632	hypothetical protein	-	2e-40	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.149678.1.A1_at	AJ771832	hypothetical protein	-	3e-50	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.50176.2.S1_a_at	CV256175	hypothetical protein	-	1e-16	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.64084.1.S1_at, orthologous to the query gene, PtpAffx.210312.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.64084.1.S1_at	At5g24430	-	-	7e-5	At2g41140	CRK1 (CDPK-RELATED KINASE 1)	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.79957.1.S1_at	At5g24430	-	-	6e-5	At3g45610	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.58533.1.S1_at	At5g24430	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.112158.1.S1_at	At5g24430	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	TaAffx.3664.1.S1_at	At5g24430	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.79549.1.S1_s_at	At5g24430	Protein serine/threonine kinase-like	-	1e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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