CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.210312.1.S1_at

Gene name CPK related kinase 4
Homology with Arabidopsis Similar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18)

Module size 6 genes

NF 0.79

%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.94 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.83 97.0 0.92 Ptp.8056.1.S1_s_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH O.I. H.G. S.X.
0.80 96.0 0.95 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH O.I. H.G. S.X.
0.67 91.1 0.94 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7 96.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig16466_at, orthologous to the query gene, PtpAffx.210312.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 95.7 Contig16466_at At5g24430 - - 4e-15 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.40 53.1 Contig19283_at At5g24430 - - 2e+1 Atmg00840 - O.I. H.G. S.X.
0.30 37.0 Contig4789_at At5g24430 - - 1e-14 At5g42790 PAF1 O.I. H.G. S.X.
0.27 32.1 Contig16432_at At5g24430 - - 1e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.26 30.4 Contig8893_at At5g24430 - - 2e-14 At5g61970 signal recognition particle-related / SRP-related O.I. H.G. S.X.
0.24 27.2 Contig12784_at At5g24430 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) O.I. H.G. S.X.
0.20 21.1 Contig11977_at At5g24430 - - 6e-1 At5g62490 ATHVA22B O.I. H.G. S.X.
0.14 12.9 Contig14607_at At5g24430 - - 2e+0 At4g37440 unknown protein O.I. H.G. S.X.
0.12 10.4 Contig20845_at At5g24430 - - 5e+0 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) O.I. H.G. S.X.
0.10 8.4 Contig20343_at At5g24430 - - 3e-1 At2g20805 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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