Co-expression analysis

Gene ID PtpAffx.210312.1.S1_at
Gene name CPK related kinase 4
Homology with ArabidopsisSimilar to At5g24430: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-18)
Module size 6 genes
NF 0.79
%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.94PtpAffx.210312.1.S1_atpmrna20295CPK related kinase 4-1e-18At5g24430calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.8397.00.92Ptp.8056.1.S1_s_atDN498527hypothetical protein-1e-7At5g64300ATGCHO.I.H.G.S.X.
0.8096.00.95Ptp.8056.1.S1_atDN498527hypothetical protein-1e-7At5g64300ATGCHO.I.H.G.S.X.
0.7393.60.94PtpAffx.212573.1.S1_atpmrna24632hypothetical protein-2e-40At5g53050hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.7393.60.94PtpAffx.149678.1.A1_atAJ771832hypothetical protein-3e-50At5g64300ATGCHO.I.H.G.S.X.
0.6791.10.94PtpAffx.50176.2.S1_a_atCV256175hypothetical protein-1e-16At2g26830emb1187 (embryo defective 1187)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.494.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g24430, orthologous to the query gene, PtpAffx.210312.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3643.6At5g24430832514calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVAO.I.H.G.S.X.
0.5065.3At5g41800834185amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;PMFOO.I.H.G.S.X.
0.3133.8At2g39660818549BIK1 (BOTRYTIS-INDUCED KINASE1)Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens.O.I.H.G.S.X.
0.168.8At3g02880821198leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall;PMOBFVAO.I.H.G.S.X.
0.092.8At5g43190834337F-box family protein (FBX6)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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