Co-expression analysis

Gene ID	PtpAffx.21027.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g15080: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) (HF=1e-7)
Module size	8 genes
NF	0.43
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	0.93	PtpAffx.21027.1.A1_at	BP931070	hypothetical protein	-	1e-7	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.117895.1.S1_at	BU879218	hypothetical protein	-	1e-10	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.95	PtpAffx.207994.1.S1_s_at	pmrna15866	hypothetical protein	-	5e-48	At1g68820	membrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	PtpAffx.153212.1.A1_at	CV266013	hypothetical protein	-	3e-2	At4g18880	AT-HSFA4A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.6067.1.S1_at	CV261949	hypothetical protein	-	1e-57	At4g15780	ATVAMP724	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	Ptp.6067.1.S1_s_at	CV261949	-	-	1e-57	At4g15780	ATVAMP724	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	Ptp.8015.1.S1_at	CV265192	hypothetical protein	-	8e-19	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.40894.2.A1_s_at	CV260755	hypothetical protein	-	4e+0	At5g44550	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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