Co-expression analysis

Gene ID PtpAffx.210237.1.S1_at
Gene name NAC domain protein, IPR003441
Homology with ArabidopsisSimilar to At5g07680: ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) (HF=1e-41)
Module size 6 genes
NF 0.25
%ile 45.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.96PtpAffx.210237.1.S1_atpmrna20155NAC domain protein, IPR003441-1e-41At5g07680ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)O.I.H.G.S.X.
0.5078.60.95PtpAffx.43906.1.A1_atCV253972hypothetical protein-4e-7At2g28200nucleic acid binding / transcription factor/ zinc ion bindingO.I.H.G.S.X.
0.4471.90.96PtpAffx.210897.1.S1_s_atpmrna21409hypothetical protein-1e+0At2g47530-O.I.H.G.S.X.
0.4067.00.96Ptp.3308.1.S1_s_atCK111889hypothetical protein-1e-3At3g21550unknown proteinO.I.H.G.S.X.
0.1830.80.96Ptp.3512.1.S1_s_atBU894954hypothetical protein-3e+0At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.0914.60.95PtpAffx.208357.1.S1_atpmrna16615hypothetical protein-1e-19At3g06210bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.0GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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