Co-expression analysis

Gene ID	PtpAffx.209982.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g49715: - (HF=1e+0)
Module size	9 genes
NF	0.11
%ile	21.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.82	PtpAffx.209982.1.S1_at	pmrna19694	hypothetical protein	-	1e+0	At1g49715	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.85	PtpAffx.14669.1.S1_at	BU888844	hypothetical protein	-	5e+0	At5g50240	PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.86	PtpAffx.21866.2.S1_s_at	CK095888	hypothetical protein	-	3e-2	At1g67360	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.90	PtpAffx.102205.1.A1_at	CV233795	hypothetical protein	-	6e+0	At5g20500	glutaredoxin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.86	PtpAffx.5772.4.A1_a_at	CV239551	hypothetical protein	-	7e+0	At3g09950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.85	PtpAffx.59746.1.S1_at	DN501190	hypothetical protein	-	1e+0	At2g43090	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.85	PtpAffx.134574.1.A1_at	CV230588	-	-	3e+0	At5g05790	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.86	PtpAffx.123510.1.S1_s_at	CA823703	hypothetical protein	-	7e-16	At5g42890	SCP2 (STEROL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.85	PtpAffx.207100.1.S1_at	pmrna14074	hypothetical protein	-	5e-8	At5g10310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	99.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.5	98.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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