Co-expression analysis

Gene ID	PtpAffx.209960.1.S1_s_at
Gene name	cytochrome P450 /// cytochrome P450
Homology with Arabidopsis	Similar to At1g11610: CYP71A18 (HF=2e-4)
Module size	6 genes
NF	0.20
%ile	37.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.91	PtpAffx.209960.1.S1_s_at	pmrna19645	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.90	PtpAffx.216683.1.S1_s_at	pmrna31628	hypothetical protein	-	3e-6	At5g38950	germin-like protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.108897.1.S1_at	BU894851	hypothetical protein	-	3e-14	At4g35750	Rho-GTPase-activating protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.52652.1.A1_at	CA824023	hypothetical protein	-	7e-3	At1g69320	CLE10 (CLAVATA3/ESR-RELATED 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.90	PtpAffx.11250.1.S1_at	CV246956	-	-	5e-4	At1g63220	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.90	PtpAffx.137722.1.S1_at	CX174412	hypothetical protein	-	5e-49	At5g60760	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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