Co-expression analysis

Gene ID	PtpAffx.209933.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g57570: - (HF=7e-1)
Module size	7 genes
NF	0.16
%ile	30.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.83	PtpAffx.209933.1.S1_at	pmrna19592	hypothetical protein	-	7e-1	At5g57570	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.85	PtpAffx.200437.1.S1_at	pmrna878	hypothetical protein	-	4e-4	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.84	PtpAffx.220701.1.S1_at	pmrna37114	hypothetical protein	-	8e+0	At2g28105	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.84	PtpAffx.120543.1.A1_at	CV274914	-	-	6e+0	At3g54290	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.84	PtpAffx.57092.1.A1_at	CV239044	-	-	9e-2	At2g39270	adenylate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.85	PtpAffx.205560.1.S1_at	pmrna10994	hypothetical protein	-	2e-1	At5g61930	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.83	PtpAffx.80156.1.S1_at	DN488849	-	-	3e-1	At3g14160	oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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