Co-expression analysis

Gene ID	PtpAffx.209905.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g29100: copper-binding family protein (HF=3e-3)
Module size	6 genes
NF	0.11
%ile	22.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.89	PtpAffx.209905.1.S1_at	pmrna19520	hypothetical protein	-	3e-3	At1g29100	copper-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.216821.1.S1_s_at	pmrna31856	hypothetical protein	-	3e-8	At1g66280	BGLU22	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.204075.1.S1_s_at	pmrna8049	hypothetical protein	-	8e-3	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.99	PtpAffx.204078.1.S1_s_at	pmrna8052	hypothetical protein	-	4e-5	At5g42260	BGLU12 (BETA GLUCOSIDASE 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.21524.1.S1_s_at	DN485247	hypothetical protein	-	1e-1	At2g03600	ATUPS3 (Arabidopsis thaliana ureide permease 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.89	PtpAffx.26476.1.A1_s_at	CV255282	hypothetical protein	-	2e+0	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.3	98.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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