Co-expression analysis

Gene ID	PtpAffx.209858.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g15030: TCP4 (TCP family transcription factor 4) (HF=3e-21)
Module size	6 genes
NF	0.34
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.209858.1.S1_s_at	pmrna19432	hypothetical protein	-	3e-21	At3g15030	TCP4 (TCP family transcription factor 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.206221.1.S1_at	pmrna12349	hypothetical protein	-	1e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.90	PtpAffx.127452.1.A1_at	CV256567	hypothetical protein	-	6e-6	At2g24970	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.206613.1.S1_at	pmrna13130	hypothetical protein	-	4e-1	At1g66420	transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.65172.2.S1_s_at	CK091698	hypothetical protein	-	1e+0	At1g67400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.1799.1.A1_at	CV275134	AP2 domain-containing transcription factor	-	7e-3	At3g20840	PLT1 (PLETHORA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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