Co-expression analysis

Gene ID	PtpAffx.209763.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g48945: LCR46 (Low-molecular-weight cysteine-rich 46) (HF=3e+0)
Module size	10 genes
NF	0.27
%ile	48.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.87	PtpAffx.209763.1.S1_at	pmrna19260	hypothetical protein	-	3e+0	At5g48945	LCR46 (Low-molecular-weight cysteine-rich 46)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.87	PtpAffx.103798.1.S1_at	CK091513	hypothetical protein	-	1e+0	At4g01250	WRKY22	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.87	PtpAffx.219441.1.S1_x_at	pmrna35362	cc-nbs-lrr resistance protein	-	1e-1	At5g45210	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.87	PtpAffx.102390.1.A1_at	CV227215	-	-	9e-10	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.86	PtpAffx.153993.1.A1_at	CV233440	hypothetical protein	-	1e+1	At4g19250	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.89	PtpAffx.206469.1.S1_at	pmrna12830	hypothetical protein	-	9e-3	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.86	PtpAffx.214376.1.S1_at	pmrna27976	hypothetical protein	-	1e+0	At4g28365	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.87	PtpAffx.22183.1.S1_at	CK094612	-	-	6e-3	At4g06676	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.87	PtpAffx.61626.4.S1_at	BP934563	-	-	1e-21	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.209028.1.S1_at	pmrna17878	hypothetical protein	-	8e-1	At1g72260	THI2.1 (THIONIN 2.1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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