CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.209719.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g11250: SYP125 (SYNTAXIN OF PLANTS 125) (HF=2e-28)

Module size 22 genes

NF 0.54

%ile 84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 97.8 0.99 PtpAffx.209719.1.S1_at pmrna19184 hypothetical protein - 2e-28 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) O.I. H.G. S.X.
0.85 97.2 1.00 PtpAffx.204028.1.S1_at pmrna7945 hypothetical protein - 6e-60 At1g65960 GAD2 (GLUTAMATE DECARBOXYLASE 2) O.I. H.G. S.X.
0.82 96.3 0.99 PtpAffx.206298.1.S1_at pmrna12485 hypothetical protein - 2e-17 At3g54100 unknown protein O.I. H.G. S.X.
0.79 95.3 0.99 PtpAffx.200244.1.S1_at pmrna472 hypothetical protein - 3e-13 At5g13150 ATEXO70C1 (exocyst subunit EXO70 family protein C1) O.I. H.G. S.X.
0.69 91.5 1.00 PtpAffx.204952.1.S1_at pmrna9797 hypothetical protein - 6e-13 At3g46750 unknown protein O.I. H.G. S.X.
0.61 87.0 0.99 PtpAffx.202004.1.S1_at pmrna3997 hypothetical protein - 7e-15 At3g49720 unknown protein O.I. H.G. S.X.
0.60 86.0 0.99 PtpAffx.207116.1.S1_at pmrna14109 hypothetical protein - 2e-25 At5g10090 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.59 84.9 1.00 PtpAffx.202223.1.S1_at pmrna4451 hypothetical protein - 1e-30 At4g00350 MATE efflux family protein O.I. H.G. S.X.
0.57 84.2 1.00 PtpAffx.85451.1.S1_s_at CV131357 hypothetical protein - 8e-129 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.56 83.9 1.00 PtpAffx.211828.1.S1_at pmrna23207 hypothetical protein - 1e-20 At3g19340 - O.I. H.G. S.X.
0.54 80.8 1.00 PtpAffx.219318.1.S1_at pmrna35201 hypothetical protein - 2e-2 At4g13190 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.54 80.8 1.00 PtpAffx.214500.1.S1_at pmrna28195 hypothetical protein - 2e-1 At4g35900 FD O.I. H.G. S.X.
0.51 78.9 0.99 PtpAffx.218924.1.S1_at pmrna34683 autoinhibited calcium ATPase - 1e-28 At2g41560 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) O.I. H.G. S.X.
0.49 75.7 1.00 PtpAffx.214487.1.S1_at pmrna28174 autoinhibited H+ ATPase - 3e-128 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) O.I. H.G. S.X.
0.48 75.4 1.00 PtpAffx.207301.1.S1_s_at pmrna14479 hypothetical protein - 1e+0 At4g37150 MES9 (METHYL ESTERASE 9) O.I. H.G. S.X.
0.47 74.6 0.99 PtpAffx.208614.1.S1_at pmrna17103 hypothetical protein - 5e-1 At3g23710 chloroplast inner membrane import protein Tic22, putative O.I. H.G. S.X.
0.46 73.7 0.99 PtpAffx.202244.1.S1_at pmrna4499 hypothetical protein - 4e-1 At4g12825 - O.I. H.G. S.X.
0.41 67.7 0.99 PtpAffx.201511.1.S1_at pmrna2975 hypothetical protein - 2e-29 At4g35410 clathrin adaptor complex small chain family protein O.I. H.G. S.X.
0.37 62.3 0.99 PtpAffx.213770.1.S1_at pmrna26887 hypothetical protein - 9e-55 At2g43900 inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase O.I. H.G. S.X.
0.37 62.3 0.99 PtpAffx.206035.1.S1_at pmrna11957 hypothetical protein - 6e-14 At2g40850 phosphatidylinositol 3- and 4-kinase family protein O.I. H.G. S.X.
0.36 61.6 0.99 PtpAffx.206714.1.S1_at pmrna13334 hypothetical protein - 9e-2 At3g52480 unknown protein O.I. H.G. S.X.
0.31 53.7 0.99 PtpAffx.208887.1.S1_at pmrna17630 aquaporin, MIP family, NIP subfamily - 3e-8 At5g37810 NIP4 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	97.8	0.99	PtpAffx.209719.1.S1_at	pmrna19184	hypothetical protein	-	2e-28	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	O.I.	H.G.	S.X.
0.85	97.2	1.00	PtpAffx.204028.1.S1_at	pmrna7945	hypothetical protein	-	6e-60	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	O.I.	H.G.	S.X.
0.82	96.3	0.99	PtpAffx.206298.1.S1_at	pmrna12485	hypothetical protein	-	2e-17	At3g54100	unknown protein	O.I.	H.G.	S.X.
0.79	95.3	0.99	PtpAffx.200244.1.S1_at	pmrna472	hypothetical protein	-	3e-13	At5g13150	ATEXO70C1 (exocyst subunit EXO70 family protein C1)	O.I.	H.G.	S.X.
0.69	91.5	1.00	PtpAffx.204952.1.S1_at	pmrna9797	hypothetical protein	-	6e-13	At3g46750	unknown protein	O.I.	H.G.	S.X.
0.61	87.0	0.99	PtpAffx.202004.1.S1_at	pmrna3997	hypothetical protein	-	7e-15	At3g49720	unknown protein	O.I.	H.G.	S.X.
0.60	86.0	0.99	PtpAffx.207116.1.S1_at	pmrna14109	hypothetical protein	-	2e-25	At5g10090	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.59	84.9	1.00	PtpAffx.202223.1.S1_at	pmrna4451	hypothetical protein	-	1e-30	At4g00350	MATE efflux family protein	O.I.	H.G.	S.X.
0.57	84.2	1.00	PtpAffx.85451.1.S1_s_at	CV131357	hypothetical protein	-	8e-129	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.
0.56	83.9	1.00	PtpAffx.211828.1.S1_at	pmrna23207	hypothetical protein	-	1e-20	At3g19340	-	O.I.	H.G.	S.X.
0.54	80.8	1.00	PtpAffx.219318.1.S1_at	pmrna35201	hypothetical protein	-	2e-2	At4g13190	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	O.I.	H.G.	S.X.
0.54	80.8	1.00	PtpAffx.214500.1.S1_at	pmrna28195	hypothetical protein	-	2e-1	At4g35900	FD	O.I.	H.G.	S.X.
0.51	78.9	0.99	PtpAffx.218924.1.S1_at	pmrna34683	autoinhibited calcium ATPase	-	1e-28	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.
0.49	75.7	1.00	PtpAffx.214487.1.S1_at	pmrna28174	autoinhibited H+ ATPase	-	3e-128	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	O.I.	H.G.	S.X.
0.48	75.4	1.00	PtpAffx.207301.1.S1_s_at	pmrna14479	hypothetical protein	-	1e+0	At4g37150	MES9 (METHYL ESTERASE 9)	O.I.	H.G.	S.X.
0.47	74.6	0.99	PtpAffx.208614.1.S1_at	pmrna17103	hypothetical protein	-	5e-1	At3g23710	chloroplast inner membrane import protein Tic22, putative	O.I.	H.G.	S.X.
0.46	73.7	0.99	PtpAffx.202244.1.S1_at	pmrna4499	hypothetical protein	-	4e-1	At4g12825	-	O.I.	H.G.	S.X.
0.41	67.7	0.99	PtpAffx.201511.1.S1_at	pmrna2975	hypothetical protein	-	2e-29	At4g35410	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.
0.37	62.3	0.99	PtpAffx.213770.1.S1_at	pmrna26887	hypothetical protein	-	9e-55	At2g43900	inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase	O.I.	H.G.	S.X.
0.37	62.3	0.99	PtpAffx.206035.1.S1_at	pmrna11957	hypothetical protein	-	6e-14	At2g40850	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.
0.36	61.6	0.99	PtpAffx.206714.1.S1_at	pmrna13334	hypothetical protein	-	9e-2	At3g52480	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.99	PtpAffx.208887.1.S1_at	pmrna17630	aquaporin, MIP family, NIP subfamily	-	3e-8	At5g37810	NIP4	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.9 98.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6 84.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
6.9	98.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.209719.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g11250: SYP125 (SYNTAXIN OF PLANTS 125) (HF=2e-28)
Module size	22 genes
NF	0.54
%ile	84.9

Co-expression analysis

Gene ID PtpAffx.209719.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g11250: SYP125 (SYNTAXIN OF PLANTS 125) (HF=2e-28) Module size 22 genes NF 0.54 %ile 84.9

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.209719.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g11250: SYP125 (SYNTAXIN OF PLANTS 125) (HF=2e-28)

Module size 22 genes

NF 0.54

%ile 84.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays