Co-expression analysis

Gene ID PtpAffx.209714.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g21600: ENDO5 (endonuclease 5) (HF=9e-13)
Module size 10 genes
NF 0.42
%ile 71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6287.20.87PtpAffx.209714.1.S1_atpmrna19175hypothetical protein-9e-13At4g21600ENDO5 (endonuclease 5)O.I.H.G.S.X.
0.6488.40.87PtpAffx.249.350.A1_atBU876410--2e-10At3g05880RCI2A (RARE-COLD-INDUCIBLE 2A)O.I.H.G.S.X.
0.4167.70.90PtpAffx.8652.1.S1_atCV234413--0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.4067.00.88PtpAffx.11401.5.A1_atCV280789hypothetical protein-2e+0At1g59590ZCF37O.I.H.G.S.X.
0.3661.60.91Ptp.7454.1.S1_s_atDN491230hypothetical protein-6e-19At5g06370NC domain-containing proteinO.I.H.G.S.X.
0.3559.70.92PtpAffx.208738.1.S1_s_atpmrna17323magnesium transporter-8e-47At5g64560magnesium transporter CorA-like family protein (MRS2-2)O.I.H.G.S.X.
0.3357.50.92PtpAffx.101712.1.A1_atCV254429--6e+0At4g14819unknown proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.5796.1.A1_atCX185221hypothetical protein-7e-10At1g27290unknown proteinO.I.H.G.S.X.
0.3255.20.91PtpAffx.249.98.S1_x_atCV264671hypothetical protein-1e+0At4g19270unknown proteinO.I.H.G.S.X.
0.2645.20.91PtpAffx.46918.1.S1_atCV238003hypothetical protein-8e-2At1g17490unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage