Co-expression analysis

Gene ID	PtpAffx.209626.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g22130: SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) (HF=3e-113)
Module size	6 genes
NF	0.16
%ile	30.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	57.5	0.90	PtpAffx.209626.1.S1_at	pmrna19021	hypothetical protein	-	3e-113	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.213760.1.S1_s_at	pmrna26870	hypothetical protein	-	5e-20	At2g43800	formin homology 2 domain-containing protein / FH2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.90	PtpAffx.224868.1.S1_at	pmrna43757	-	-	8e-5	At1g67520	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.90	PtpAffx.201638.1.S1_at	pmrna3250	hypothetical protein	-	1e-23	At1g27620	transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.64361.1.S1_s_at	CV228112	hypothetical protein	-	5e-63	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.90	PtpAffx.82034.1.A1_at	CV262920	hypothetical protein	-	7e+0	At4g21850	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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