Co-expression analysis

Gene ID	PtpAffx.209602.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g62280: SLAH1 (SLAC1 HOMOLOGUE 1) (HF=2e-6)
Module size	7 genes
NF	0.01
%ile	0.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.79	PtpAffx.209602.1.S1_at	pmrna18990	-	-	2e-6	At1g62280	SLAH1 (SLAC1 HOMOLOGUE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.85	PtpAffx.122818.1.S1_at	CK104754	-	-	5e+0	At2g41600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.86	PtpAffx.209097.1.S1_x_at	pmrna17990	hypothetical protein	-	8e+0	At4g30980	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.80	PtpAffx.42072.1.S1_at	DN496402	hypothetical protein	-	3e+0	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.87	PtpAffx.53559.1.S1_at	DN499994	-	-	6e-2	At4g02360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.85	PtpAffx.69012.1.S1_at	CV274040	hypothetical protein	-	1e+0	At3g29152	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.85	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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