Co-expression analysis

Gene ID	PtpAffx.209580.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g11710: pentatricopeptide (PPR) repeat-containing protein (HF=5e-12)
Module size	14 genes
NF	0.34
%ile	60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	0.90	PtpAffx.209580.1.S1_at	pmrna18959	hypothetical protein	-	5e-12	At1g11710	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.96	Ptp.4697.2.A1_a_at	CV277595	-	-	8e-6	At5g27820	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.6725.1.S1_s_at	CV258566	hypothetical protein	-	1e-25	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.32845.1.S1_at	CK097658	hypothetical protein	-	5e-61	At2g20140	26S protease regulatory complex subunit 4, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.95	PtpAffx.142779.1.S1_at	BP934853	hypothetical protein	-	9e-25	At1g67325	binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	Ptp.4697.1.A1_a_at	CV254017	hypothetical protein	-	5e+0	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.135663.1.S1_s_at	BU821395	hypothetical protein	-	6e-1	At4g28160	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.97	PtpAffx.32924.1.A1_at	CV269695	-	-	4e+0	At3g60260	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.48273.1.A1_at	CV265239	-	-	3e-5	At5g40280	ERA1 (ENHANCED RESPONSE TO ABA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.30565.1.A1_at	CV269996	hypothetical protein	-	9e-11	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.97	PtpAffx.2382.2.A1_s_at	CV270096	hypothetical protein	-	2e-61	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.96	Ptp.684.1.A1_x_at	CV237082	nucleosome/chromatin assembly factor group	-	5e-84	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.97	Ptp.3438.1.S1_at	CN519429	hypothetical protein	-	2e-13	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.96	Ptp.7462.1.S1_s_at	CV228049	hypothetical protein	-	5e-10	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	92.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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