Co-expression analysis

Gene ID PtpAffx.209559.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g74580: pentatricopeptide (PPR) repeat-containing protein (HF=1e-21)
Module size 6 genes
NF 0.09
%ile 18.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.86PtpAffx.209559.1.S1_atpmrna18930hypothetical protein-1e-21At1g74580pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2543.60.95PtpAffx.30830.2.A1_a_atCK097727hypothetical protein-2e-9At1g09870histidine acid phosphatase family proteinO.I.H.G.S.X.
0.0812.90.94PtpAffx.21534.1.S1_atCV274266hypothetical protein-2e-35At3g56190ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)O.I.H.G.S.X.
0.0711.60.95PtpAffx.3484.1.S1_s_atDN489134hypothetical protein-2e-23At2g28910CXIP4 (CAX INTERACTING PROTEIN 4)O.I.H.G.S.X.
0.069.80.95Ptp.45.1.A1_s_atCV280199--2e-174At3g13920EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)O.I.H.G.S.X.
0.035.20.94PtpAffx.4196.3.S1_a_atCV238875hypothetical protein-2e-48At4g31180aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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