Co-expression analysis

Gene ID	PtpAffx.209541.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g28270: zinc finger (C3HC4-type RING finger) family protein (HF=8e-2)
Module size	23 genes
NF	0.17
%ile	32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.75	PtpAffx.209541.1.S1_x_at	pmrna18906	hypothetical protein	-	8e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	PtpAffx.7425.1.S1_a_at	CA824840	hypothetical protein	-	5e-3	At1g31440	SH3 domain-containing protein 1 (SH3P1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.85	PtpAffx.211447.1.S1_s_at	pmrna22435	hypothetical protein	-	7e-1	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.91	PtpAffx.3698.2.S1_at	BU894200	hypothetical protein	-	1e-82	At1g77610	glucose-6-phosphate/phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.92	PtpAffx.37541.1.A1_s_at	CV238987	hypothetical protein	-	2e-62	At5g26667	PYR6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.85	Ptp.2525.1.S1_at	AY126444.1	cinnamyl alcohol dehydrogenase-like protein	-	9e-16	At4g39330	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	PtpAffx.3084.2.A1_a_at	CV244899	hypothetical protein	-	3e-45	At1g08200	AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.92	PtpAffx.201570.1.S1_at	pmrna3081	hypothetical protein	-	5e-10	At5g42220	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.84	PtpAffx.218816.1.S1_at	pmrna34554	hypothetical protein	-	2e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	PtpAffx.39452.1.A1_at	CV245395	hypothetical protein	-	1e-10	At4g17430	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.140430.1.A1_at	CV268445	hypothetical protein	-	3e-8	At2g45340	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.200831.1.S1_at	pmrna1622	hypothetical protein	-	1e-14	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.88	PtpAffx.12409.1.S1_at	CV229521	hypothetical protein	-	5e-3	At2g40540	KT2 (POTASSIUM TRANSPORTER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.89	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.86	PtpAffx.12439.8.S1_at	CV268872	-	-	2e-2	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.86	PtpAffx.201582.1.S1_at	pmrna3103	hypothetical protein	-	5e-1	At3g45870	integral membrane family protein / nodulin MtN21-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.79	PtpAffx.209805.1.S1_at	pmrna19341	hypothetical protein	-	1e-36	At3g13070	CBS domain-containing protein / transporter associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.249.318.A1_a_at	CV130443	hypothetical protein	-	9e-15	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.85	PtpAffx.49543.1.A1_at	CV281092	-	-	8e-18	At3g05740	RECQI1 (Arabidopsis RecQ helicase l1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.202032.1.S1_at	pmrna4052	hypothetical protein	-	1e-36	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.84	PtpAffx.211593.1.S1_at	pmrna22716	hypothetical protein	-	5e-1	At1g73030	VPS46.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.85	PtpAffx.73942.1.S1_at	DN500266	hypothetical protein	-	5e-1	At3g25760	AOC1 (ALLENE OXIDE CYCLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.91	PtpAffx.3084.5.A1_a_at	CV230306	hypothetical protein	-	4e-31	At1g08200	AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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