Co-expression analysis

Gene ID	PtpAffx.209537.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g59250: F-box family protein (HF=1e+0)
Module size	6 genes
NF	0.77
%ile	98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.91	PtpAffx.209537.1.S1_at	pmrna18896	hypothetical protein	-	1e+0	At3g59250	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.92	PtpAffx.162331.1.S1_at	CA821362	-	-	1e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	PtpAffx.200185.1.S1_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.87	PtpAffx.21178.1.S1_at	BU887045	hypothetical protein	-	1e+0	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.127059.1.A1_at	CV258719	hypothetical protein	-	1e-4	At1g66270	BGLU21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.212416.1.S1_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.421.1.A1_at, orthologous to the query gene, PtpAffx.209537.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	ZmAffx.421.1.A1_at	At3g59250	-	-	3e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	O.I.	H.G.	S.X.	Please select
0.75	90.8	ZmAffx.328.1.A1_at	At3g59250	-	-	3e+0	At3g07510	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	RPTR-Zm-J01347-2_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.63	81.1	RPTR-Zm-J01347-1_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.704.1.S1_at	At3g59250	xyloglucan endotransglycosylase homolog1	-	3e-6	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.16892.3.S1_a_at	At3g59250	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.51	66.4	RPTR-Zm-J01347-4_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.50	65.7	ZmAffx.361.1.A1_at	At3g59250	-	-	8e-1	At1g15800	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.1638.1.S1_at	At3g59250	hypothetical protein LOC100192625	-	2e-15	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.11965.1.A1_at	At3g59250	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select
0.48	61.3	RPTR-Zm-J01636-1_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.48	61.3	ZmAffx.264.1.A1_at	At3g59250	-	-	3e+0	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.15807.1.A1_at	At3g59250	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.3966.1.A1_at	At3g59250	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.13913.1.S1_s_at	At3g59250	ROA protein 1 /// replication origin activator 2 /// replication origin activator 4	-	8e-11	At5g46280	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.12244.2.S1_at	At3g59250	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.654.1.A1_at	At3g59250	hypothetical LOC542071	-	1e-3	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.1818.1.S1_a_at	At3g59250	hypothetical protein LOC100194358	-	5e+0	At5g48545	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.144.1.S1_x_at	At3g59250	metallothionein2	-	2e+1	At5g38344	transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.762.1.A1_a_at	At3g59250	-	-	1e-4	At3g05740	RECQI1 (Arabidopsis RecQ helicase l1)	O.I.	H.G.	S.X.	Please select
0.41	49.7	ZmAffx.366.1.A1_at	At3g59250	-	-	5e+0	At3g63350	AT-HSFA7B	O.I.	H.G.	S.X.	Please select
0.41	49.7	ZmAffx.370.1.S1_at	At3g59250	-	-	3e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.40	48.5	RPTR-Zm-X17220-1_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.2165.1.A1_at	At3g59250	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	RPTR-Zm-ECOLOXL_x_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.38	44.2	ZmAffx.29.1.S1_at	At3g59250	-	-	2e-1	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select
0.38	44.2	RPTR-Zm-ECOLOXL_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.37	42.3	RPTR-Zm-ECOLOXB_x_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.36	41.3	RPTR-Zm-J01347-3_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.34	37.2	RPTR-Zm-J01347-1_s_at	At3g59250	-	-				O.I.	H.G.	S.X.	Please select
0.33	36.0	ZmAffx.452.1.A1_at	At3g59250	-	-	3e-6	At3g03380	DegP7 (DegP protease 7)	O.I.	H.G.	S.X.	Please select
0.33	36.0	ZmAffx.622.1.S1_at	At3g59250	-	-	1e+1	At2g44370	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	ZmAffx.426.1.A1_at	At3g59250	-	-	5e-2	At5g43210	endo/excinuclease amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	ZmAffx.338.1.S1_at	At3g59250	-	-	3e+0	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.675.1.A1_at	At3g59250	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	ZmAffx.664.1.S1_at	At3g59250	-	-	4e+0	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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