Co-expression analysis

Gene ID	PtpAffx.209537.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g59250: F-box family protein (HF=1e+0)
Module size	6 genes
NF	0.77
%ile	98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.91	PtpAffx.209537.1.S1_at	pmrna18896	hypothetical protein	-	1e+0	At3g59250	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.92	PtpAffx.162331.1.S1_at	CA821362	-	-	1e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	PtpAffx.200185.1.S1_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.87	PtpAffx.21178.1.S1_at	BU887045	hypothetical protein	-	1e+0	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.127059.1.A1_at	CV258719	hypothetical protein	-	1e-4	At1g66270	BGLU21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.212416.1.S1_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.51842.1.S1_x_at, orthologous to the query gene, PtpAffx.209537.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	TaAffx.51842.1.S1_x_at	At3g59250	-	-	7e+0	At4g10150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.26495.1.A1_at	At3g59250	-	-	3e-26	At2g48070	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.25131.2.S1_at	At3g59250	-	-	4e+0	At4g16520	ATG8F (autophagy 8f)	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.121565.1.S1_at	At3g59250	-	-	1e+0	At4g09530	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.26416.1.S1_at	At3g59250	-	-	4e+1	At5g01350	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.5807.1.A1_at	At3g59250	-	-	3e+0	At5g43290	WRKY49	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.21769.1.S1_at	At3g59250	-	-	2e+0	At1g50670	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.107539.1.S1_at	At3g59250	-	-	2e-1	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.85969.1.S1_at	At3g59250	-	-	7e-2	At3g26780	catalytic	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.86853.1.S1_at	At3g59250	-	-	7e-2	At5g05460	hydrolase, acting on glycosyl bonds / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.17509.1.S1_at	At3g59250	-	-	9e-3	At3g15630	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.8099.1.S1_at	At3g59250	-	-	3e-1	At5g56325	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.4689.1.S1_at	At3g59250	-	-	1e+1	At3g58910	F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.50886.1.S1_at	At3g59250	-	-	4e+0	At5g63070	40S ribosomal protein S15, putative	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.111613.1.S1_at	At3g59250	-	-	9e-1	At3g57670	NTT (NO TRANSMITTING TRACT)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.70061.10.S1_at	At3g59250	-	-	3e+0	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.107525.1.S1_at	At3g59250	-	-	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.10340.1.S1_at	At3g59250	-	-	1e+0	At5g09470	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.113081.1.S1_at	At3g59250	-	-	9e+0	At4g05553	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.10063.2.S1_at	At3g59250	-	-	1e+0	At1g43667	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.30064.1.S1_at	At3g59250	-	-	1e+1	At5g25340	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.122081.2.S1_at	At3g59250	-	-	3e+0	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.25608.2.S1_a_at	At3g59250	-	-	3e+0	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.52689.1.S1_at	At3g59250	-	-	1e+1	At4g16930	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.81077.1.S1_s_at	At3g59250	-	-	5e-3	At3g20900	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.30064.1.S1_x_at	At3g59250	-	-	1e+1	At5g25340	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.28826.1.S1_at	At3g59250	-	-	4e+0	At5g55210	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.10107.3.S1_at	At3g59250	-	-	1e-3	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.118765.1.S1_at	At3g59250	-	-	8e-2	At2g35170	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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