CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.209537.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g59250: F-box family protein (HF=1e+0)

Module size 6 genes

NF 0.77

%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.91 PtpAffx.209537.1.S1_at pmrna18896 hypothetical protein - 1e+0 At3g59250 F-box family protein O.I. H.G. S.X.
0.91 99.2 0.92 PtpAffx.162331.1.S1_at CA821362 - - 1e+0 At4g11640 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) O.I. H.G. S.X.
0.80 96.0 0.95 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) O.I. H.G. S.X.
0.73 93.6 0.87 PtpAffx.21178.1.S1_at BU887045 hypothetical protein - 1e+0 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 O.I. H.G. S.X.
0.40 67.0 0.92 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.0 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the barley gene, Contig18037_at, orthologous to the query gene, PtpAffx.209537.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 95.2 Contig18037_at At3g59250 - - 1e+0 At3g27770 unknown protein O.I. H.G. S.X.
0.40 53.1 Contig13551_at At3g59250 - - 5e-4 At1g22050 MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR) O.I. H.G. S.X.
0.40 53.1 Contig21572_at At3g59250 - - 5e-1 At5g48655 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.16 15.3 Contig9457_at At3g59250 - - 2e-3 At5g66070 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.15 14.1 Contig5297_at At3g59250 - - 4e-16 At1g64550 ATGCN3 O.I. H.G. S.X.
0.12 10.4 Contig6232_at At3g59250 - - 8e-1 At2g01720 ribophorin I family protein O.I. H.G. S.X.
0.10 8.4 Contig10592_at At3g59250 - - 1e-2 At5g26180 NOL1/NOP2/sun family protein O.I. H.G. S.X.
0.06 4.8 Contig9392_at At3g59250 - - 5e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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