Co-expression analysis

Gene ID	PtpAffx.209527.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g38870: F-box family protein (HF=3e-1)
Module size	6 genes
NF	0.22
%ile	40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.79	PtpAffx.209527.1.S1_at	pmrna18875	hypothetical protein	-	3e-1	At4g38870	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.80	Ptp.3194.1.A1_at	DN485939	-	-	1e+0	At1g29195	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.79	PtpAffx.216771.1.S1_at	pmrna31758	hypothetical protein	-	7e+0	At3g52941	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.79	PtpAffx.208416.1.S1_at	pmrna16726	hypothetical protein	-	3e+0	At4g00234	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.79	PtpAffx.1092.2.A1_at	CV248692	-	-	3e-1	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.80	PtpAffx.35277.1.S1_at	BU874449	-	-	3e+0	At3g04280	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.12770.1.A1_at, orthologous to the query gene, PtpAffx.209527.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.7	Gma.12770.1.A1_at	At4g38870	-	-	3e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.77967.1.S1_at	At4g38870	-	-	1e+0	At3g55150	ATEXO70H1 (exocyst subunit EXO70 family protein H1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.45053.1.S1_s_at	At4g38870	-	-	3e-18	At3g18800	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.75914.1.S1_at	At4g38870	-	-	2e-9	At3g61680	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.8687.1.A1_at	At4g38870	-	-	6e-9	At3g51860	CAX3 (CATION EXCHANGER 3)	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.37199.1.S1_at	At4g38870	-	-	2e-5	At2g37790	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.9322.1.A1_at	At4g38870	-	-	3e+0	At4g14730	transmembrane protein-related	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.2185.2.S1_a_at	At4g38870	-	-	3e-1	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.67291.1.S1_at	At4g38870	-	-	3e-1	At2g47950	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.71237.1.S1_at	At4g38870	-	-	4e+0	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.1281.1.S1_at	At4g38870	-	-	1e-1	At5g24230	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.30428.1.S1_at	At4g38870	-	-	1e-50	At1g16030	Hsp70b (heat shock protein 70B)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.16677.1.S1_at	At4g38870	-	-	1e+0	At5g63087	-	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.90913.1.S1_s_at	At4g38870	-	-	1e-9	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage