Co-expression analysis

Gene ID PtpAffx.209527.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g38870: F-box family protein (HF=3e-1)
Module size 6 genes
NF 0.22
%ile 40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4471.90.79PtpAffx.209527.1.S1_atpmrna18875hypothetical protein-3e-1At4g38870F-box family proteinO.I.H.G.S.X.
0.3661.60.80Ptp.3194.1.A1_atDN485939--1e+0At1g29195unknown proteinO.I.H.G.S.X.
0.2136.50.79PtpAffx.216771.1.S1_atpmrna31758hypothetical protein-7e+0At3g52941unknown proteinO.I.H.G.S.X.
0.2034.60.79PtpAffx.208416.1.S1_atpmrna16726hypothetical protein-3e+0At4g00234-O.I.H.G.S.X.
0.1423.50.79PtpAffx.1092.2.A1_atCV248692--3e-1At2g33810SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)O.I.H.G.S.X.
0.1016.30.80PtpAffx.35277.1.S1_atBU874449--3e+0At3g04280ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.195.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.894.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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