Co-expression analysis

Gene ID	PtpAffx.209432.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g10420: sporulation protein-related (HF=3e-145)
Module size	6 genes
NF	0.41
%ile	69.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.92	PtpAffx.209432.1.S1_at	pmrna18676	hypothetical protein	-	3e-145	At3g10420	sporulation protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.160733.1.S1_s_at	AJ780703	hypothetical protein	-	6e-25	At3g07700	ABC1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	Ptp.6110.1.S1_at	CV266769	hypothetical protein	-	3e-14	At3g10420	sporulation protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	Ptp.5123.1.S1_s_at	BI123501	hypothetical protein	-	2e-71	At3g07700	ABC1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.13485.1.A1_at	CV255649	hypothetical protein	-	4e-11	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.221479.1.S1_s_at	pmrna38382	hypothetical protein	-	2e-6	At1g15760	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
7.3	98.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6	97.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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