Co-expression analysis

Gene ID PtpAffx.209407.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g38970: zinc finger (C3HC4-type RING finger) family protein (HF=2e-39)
Module size 6 genes
NF 0.57
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.209407.1.S1_atpmrna18634hypothetical protein-2e-39At2g38970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.206196.1.S1_atpmrna12304hypothetical protein-4e-19At2g19090unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.204628.1.S1_s_atpmrna9099hypothetical protein-3e+0At4g00232unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.55272.1.S1_atBP927962--5e-9At3g58050unknown proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.8434.1.A1_atCV268037hypothetical protein-4e-20At3g21600senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.4067.00.92PtpAffx.56940.1.A1_atCV243741hypothetical protein-1e-2At5g62900unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5984.90.88PtpAffx.221824.1.S1_atpmrna38898hypothetical protein-6e-2At1g02610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5582.20.90Ptp.1193.1.A1_atCK089967--7e-1At2g02290NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.5078.60.87Ptp.3774.1.S1_s_atDN489300--8e+0At5g38750asparaginyl-tRNA synthetase familyO.I.H.G.S.X.
0.4774.60.89PtpAffx.202662.1.S1_atpmrna5314hypothetical protein-2e-44At5g48800phototropic-responsive NPH3 family proteinO.I.H.G.S.X.
0.4369.70.89PtpAffx.45735.1.S1_atCV230334hypothetical protein-5e-1At1g066202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.4369.70.92PtpAffx.211911.1.S1_s_atpmrna23394GRAS family transcription factor-4e-39At5g48150PAT1 (phytochrome a signal transduction 1)O.I.H.G.S.X.
0.4369.70.92PtpAffx.211039.1.S1_atpmrna21687hypothetical protein-1e-35At5g63930leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4067.00.87PtpAffx.26968.2.A1_a_atCV245141--3e-1At4g12600ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.4067.00.88PtpAffx.200945.1.S1_atpmrna1857hypothetical protein-3e-2At2g34620mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.4067.00.89PtpAffx.130783.3.A1_atCV271323--4e-1At2g26560PLA2A (PHOSPHOLIPASE A 2A)O.I.H.G.S.X.
0.4067.00.91Ptp.2748.1.A1_s_atDN492375hypothetical protein-1e-13At5g49660leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4067.00.91PtpAffx.208219.1.S1_x_atpmrna16355hypothetical protein-3e-14At2g33310IAA13O.I.H.G.S.X.
0.3661.60.89PtpAffx.222699.1.S1_x_atpmrna40270hypothetical protein-5e-9At1g03040basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3661.60.91PtpAffx.106163.1.A1_atCV240193hypothetical protein-4e-1At3g18800unknown proteinO.I.H.G.S.X.
0.3357.50.89PtpAffx.203051.1.S1_atpmrna6040hypothetical protein-2e-7At5g10200bindingO.I.H.G.S.X.
0.3255.20.84PtpAffx.63488.1.S1_atCV232703--4e-10At4g31550WRKY11O.I.H.G.S.X.
0.3153.70.89PtpAffx.80305.1.S1_atDN503128heavy metal ATPase /// heavy metal ATPase-1e-2At3g58020heat shock protein bindingO.I.H.G.S.X.
0.3052.00.89Ptp.7528.1.S1_s_atCK102716SAUR family protein-4e-1At1g09795ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)O.I.H.G.S.X.
0.2747.10.90PtpAffx.1108.2.A1_a_atCV247323f-box family protein-4e-1At2g18920unknown proteinO.I.H.G.S.X.
0.2747.10.86PtpAffx.224523.1.S1_atpmrna43142hypothetical protein-7e-22At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.
0.2747.10.90PtpAffx.18308.2.S1_atCX172268--6e+0At5g64530XND1O.I.H.G.S.X.
0.2747.10.91PtpAffx.11742.1.A1_atCV254453hypothetical protein-1e-17At5g25160ZFP3 (ZINC FINGER PROTEIN 3)O.I.H.G.S.X.
0.2543.60.88PtpAffx.43500.1.A1_atCV268832AP2/ERF domain-containing transcription factor-1e+0At1g74080MYB122 (MYB DOMAIN PROTEIN 122)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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